{"id":43187,"date":"2023-11-20T03:15:04","date_gmt":"2023-11-20T09:15:04","guid":{"rendered":"https:\/\/stage.cancerimagingarchive.net\/collection\/prostate-diagnosis\/"},"modified":"2023-12-15T14:00:23","modified_gmt":"2023-12-15T20:00:23","slug":"prostate-diagnosis","status":"publish","type":"tcia_collection","link":"https:\/\/stage.cancerimagingarchive.net\/collection\/prostate-diagnosis\/","title":{"rendered":"PROSTATE-DIAGNOSIS"},"featured_media":0,"template":"","class_list":["post-43187","tcia_collection","type-tcia_collection","status-publish"],"cancer_types":["Prostate Cancer"],"citations":[43163,9225],"collection_doi":"10.7937\/K9\/TCIA.2015.FOQEUJVT","collection_download_info":"","collection_downloads":[43165,43167,43169,43171,43173],"versions":[43185],"additional_resources":"<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p>\n<li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=prostate_diagnosis\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li>","cancer_locations":["Prostate"],"collection_page_accessibility":"Public","publications_related":"","version_change_log_archived":"<h3>Version 2 (Current): Updated 2021\/08\/09:<\/h3>\n<p>A database mismatch in 4 series of PatientID <strong>ProstateDx-01-0035<\/strong> was updated so that PatientName, PatientID, and the image are now correct. No changes were made to UID, zips or Excel files.<\/p><h3>Version 1: Updated 2013\/01\/30<\/h3>\n<table><colgroup><col\/><col\/><col\/><\/colgroup><tbody><tr><th>Data Type<\/th><th>Download all or Query\/Filter<\/th><th>License<\/th><\/tr><tr><td>Images (DICOM, 5.6GB)<\/td><td><div><p>\n<a download=\"TCIA_PROSTATE-DIAGNOSIS_06-22-2015.tcia\" href=\"\/wp-content\/uploads\/TCIA_PROSTATE-DIAGNOSIS_06-22-2015.tcia\"><button><i><\/i> Download<\/button><\/a>\u00a0\n\n<a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=PROSTATE-DIAGNOSIS\"><button><i><\/i> Search<\/button><\/a>\u00a0\n<\/p><\/div><p>(Download requires the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/NBIA+Data+Retriever+Help\">NBIA Data Retriever<\/a>)<\/p><\/td><td><div><p><a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td>Clinical Metadata (XLS)<\/td><td><div><p>\n<a download=\"ProstateDiagnosis_metadata-05-07-2012.xlsx\" href=\"\/wp-content\/uploads\/ProstateDiagnosis_metadata-05-07-2012.xlsx\"><button><i><\/i> Download<\/button><\/a>\u00a0\n<\/p><\/div><\/td><td><div><p><a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td>Multi-component NRRD Segmentations (zip)<\/td><td><div><p>\n<a download=\"ProstateDx-NRRD-T2W_TSE_AX-05-07-2012.zip\" href=\"\/wp-content\/uploads\/ProstateDx-NRRD-T2W_TSE_AX-05-07-2012.zip\"><button><i><\/i> Download<\/button><\/a>\u00a0\n<\/p><\/div><\/td><td><div><p><a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td>NCI ISBI Challenge - Segmentations of\u00a0central gland and the peripheral zone (zip)<\/td><td><div><p>\n<a download=\"NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip\" href=\"\/wp-content\/uploads\/NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip\"><button><i><\/i> Download<\/button><\/a>\u00a0\n<\/p><\/div><\/td><td><div><p><a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td>Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip)<\/td><td><div><p>\n<a download=\"ProstateDx_1.5T_Training_Segmentations.zip\" href=\"\/wp-content\/uploads\/ProstateDx_1.5T_Training_Segmentations.zip\"><button><i><\/i> Download<\/button><\/a>\u00a0\n<\/p><\/div><\/td><td><div><p><a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table>","collection_status":"Complete","publications_using":"<p>TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage our data. If you have a publication you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact TCIA's Helpdesk<\/a>.<\/p>","related_analysis_results":[45675],"species":["Human"],"version_number":"2","collection_title":"PROSTATE-DIAGNOSIS","date_updated":"2021-08-09","related_collection":false,"subjects":"92","analysis_results":"<p>TCIA encourages the community to <a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:<\/p>\n<ul><li><a href=\"https:\/\/cancerimagingarchive.net\/analysis-result\/isbi-mr-prostate-2013\/\" target=\"_blank\">NCI-ISBI 2013 Challenge: Automated Segmentation of Prostate Structures (ISBI-MR-Prostate-2013)<\/a><\/li><\/ul>","collection_short_title":"PROSTATE-DIAGNOSIS","data_types":["MR"],"version_change_log":"<p>A database mismatch in 4 series of PatientID <strong>ProstateDx-01-0035<\/strong> was updated so that PatientName, PatientID, and the image are now correct. No changes were made to UID, zips or Excel files.<\/p>","collection_browse_title":"Prostate-Diagnosis","detailed_description":"<h4>Metadata<\/h4>\n<p>Corresponding clinical metadata (XLS format) and 3D segmentation files (NRRD format) are offered as a supplement to this image collection.<\/p>\n<ul><li><a download=\"ProstateDiagnosis_metadata-05-07-2012.xlsx\" href=\"\/wp-content\/uploads\/ProstateDiagnosis_metadata-05-07-2012.xlsx\">Prostate-Diagnosis metadata<\/a>\u00a0(updated 2012-05-07) - The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most subjects.<\/li><li>NRRD 3D segmentations (2 separate sets of segmentations available)<ul><li><a download=\"ProstateDx-NRRD-T2W_TSE_AX-05-07-2012.zip\" href=\"\/wp-content\/uploads\/ProstateDx-NRRD-T2W_TSE_AX-05-07-2012.zip\">NRRD segmentations<\/a>\u00a0(updated 2012-05-07)- The software used to generate the NRRD files on the MR T2W_TSE_AX image sequences was\u00a0<a href=\"http:\/\/www.slicer.org\/\">3DSlicer<\/a>.\u00a0The 3DSlicer NRRD files allow visualization and downstream analysis of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer \u2013 dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. Presently, there are available mark-ups of 5 cases (case extension #'s 0006, 0014, 0019, 0021, 0048). These markups are made public courtesy (and copyrighted by) Dr. Nicolas Bloch as portions of his forthcoming online prostate cancer image atlas.<\/li><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/6882545\/NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip?version=1&amp;modificationDate=1364323551603&amp;api=v2\">NCI_ISBI_Challenge-ProstateDx_Training_Segmentations.zip<\/a>- This file contains segmentations for 30 Prostate-Diagnosis subjects in NRRD format which mark the boundaries of the central gland and peripheral zone.\u00a0This data was provided as part of the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/NCI-ISBI+2013+Challenge+-+Automated+Segmentation+of+Prostate+Structures\">NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures<\/a>.<\/li><li> <a data-linked-resource-container-id=\"3277254\" data-linked-resource-container-version=\"75\" data-linked-resource-content-type=\"application\/zip\" data-linked-resource-default-alias=\"ProstateDx_1.5T_Training_Segmentations.zip\" data-linked-resource-id=\"22643049\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" data-nice-type=\"Zip Archive\" download=\"ProstateDx_1.5T_Training_Segmentations.zip\" href=\"\/wp-content\/uploads\/ProstateDx_1.5T_Training_Segmentations.zip\">ProstateDx_1.5T_Training_Segmentations.zip<\/a> - Segmentations of the neurovascular bundle and seminal vessicles are available as MHA files. These were provided as part of a planned follow up competition that did not materialize.<\/li><li><u> <strong>Note:<\/strong> <\/u> see our tutorial on <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/Hands-On+Tutorial%3A+Using+3D+Slicer+with+the+Prostate-Diagnosis+Data\">Using 3D Slicer with the Prostate-Diagnosis data<\/a> if you are not familiar with using this kind of data.<\/li><\/ul><\/li><\/ul>","supporting_data":["Clinical","Image Analyses"],"collection_featured_image":false,"collection_summary":"Prostate cancer T1- and T2-weighted magnetic resonance images (MRIs) were acquired on a 1.5 T Philips Achieva by combined surface and endorectal coil, including dynamic contrast-enhanced images obtained prior to, during and after I.V. administration of 0.1 mmol\/kg body weight of Gadolinium-DTPA (pentetic acid). Corresponding clinical metadata (XLS format) and 3D segmentation files (NRRD format) are offered as a supplement to this image collection. \u00a0The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most subjects. \u00a0<p>The Multi-component NRRD Segmentations allow visualization and downstream analysis in 3D Slicer of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer \u2013 dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. See our tutorial on <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/Hands-On+Tutorial%3A+Using+3D+Slicer+with+the+Prostate-Diagnosis+Data\">Using 3D Slicer with the Prostate-Diagnosis data<\/a> if you are not familiar with using this kind of data.<\/p><p>The Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations delineate the neurovascular bundle and seminal vessicles as MHA files. These were provided as part of a planned challenge competition that did not materialize.<\/p><p>The Third Party Analysis dataset mentioned beneath the Data Access table was added later as part of the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/NCI-ISBI+2013+Challenge+-+Automated+Segmentation+of+Prostate+Structures\">NCI-ISBI 2013 Challenge - Automated Segmentation of Prostate Structures<\/a>. It includes segmentations for 30 Prostate-Diagnosis subjects in NRRD format which mark the boundaries of the central gland and peripheral zone were also provided\u00a0<\/p>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":"0","program":["Community"],"_links":{"self":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections\/43187","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections"}],"about":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/wp\/v2\/types\/tcia_collection"}],"version-history":[{"count":1,"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections\/43187\/revisions"}],"predecessor-version":[{"id":47417,"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections\/43187\/revisions\/47417"}],"wp:attachment":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/wp\/v2\/media?parent=43187"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}