{"id":45249,"date":"2023-11-20T05:02:52","date_gmt":"2023-11-20T11:02:52","guid":{"rendered":"https:\/\/stage.cancerimagingarchive.net\/collection\/cptac-sar\/"},"modified":"2024-09-26T15:59:58","modified_gmt":"2024-09-26T20:59:58","slug":"cptac-sar","status":"publish","type":"tcia_collection","link":"https:\/\/stage.cancerimagingarchive.net\/collection\/cptac-sar\/","title":{"rendered":"CPTAC-SAR"},"featured_media":47081,"template":"","class_list":["post-45249","tcia_collection","type-tcia_collection","status-publish","has-post-thumbnail"],"cancer_types":["Sarcomas"],"citations":[45163,46761,9225],"collection_doi":"10.7937\/tcia.2019.9bt23r95","collection_download_info":"","collection_downloads":[45167,45169],"versions":[45231,45233,45235,45237,45239,45241,45243,45245,45247],"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\r\n\r\n&nbsp;\r\n<ul>\r\n \t<li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=cptac_sar\">Imaging Data Commons (IDC)<\/a>\u00a0(Imaging Data)<\/li>\r\n \t<li>Genomic Data Commons (GDC)\u00a0(Genomic, Digitized Histopathology &amp; Clinical Data) <span style=\"color: #ff0000;\">coming soon.<\/span><\/li>\r\n<\/ul>","cancer_locations":["Abdomen","Arm","Bladder","Chest","Head-Neck","Kidney","Leg","Retroperitoneum","Stomach","Uterus"],"collection_page_accessibility":"Public","publications_related":"","version_change_log_archived":"<h3>Version 10 (Current): Updated 2023\/05\/10<\/h3><table><tbody><tr><th>Data Type<\/th><th>Download all or Query\/Filter<\/th><\/tr><tr><td>Images (DICOM, 15.2 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/TCIA-CPTAC-SAR_v9_20230224.tcia\" download=\"TCIA-CPTAC-SAR_v9_20230224.tcia\"><button><i><\/i> Download<\/button><\/a>\u00a0 <a href=\"\u00a0https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=CPTAC-SAR\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 72 GB)<\/td><td><div>\u00a0<\/div><p><a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU4OSIsInBhc3Njb2RlIjoiNmU4M2JkZWU2YmNhZGNmM2I0YWVlYjQ0ZjJlY2FiOWEzYTE0MmFiMyIsInBhY2thZ2VfaWQiOiI1ODkiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=\"><button><i><\/i> Download<\/button><\/a>\u00a0 <a href=\"https:\/\/cancerimagingarchive.net\/datascope\/cptac\/home\/?filter={%22Tumor%22:%5B%22SAR%22%5D,%22Image_Available%22:%5B%22Yes%22%5D}\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/td><\/tr><\/tbody><\/table><p>1 pathology patient removed from study.<\/p><h3>Version 9: Updated 2023\/02\/24<\/h3><table><tbody><tr><th>Data Type<\/th><th>Download all or Query\/Filter<\/th><\/tr><tr><td>Images (DICOM, 15.2 GB)<\/td><td><div>\u00a0<\/div><p><a href=\"\/wp-content\/uploads\/TCIA-CPTAC-SAR_v9_20230224.tcia\" download=\"TCIA-CPTAC-SAR_v9_20230224.tcia\"><button><i><\/i> Download<\/button><\/a>\u00a0<\/p><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 69 GB)<\/td><td><div><p><a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjcxNSIsInBhc3Njb2RlIjoiNTQ2ZWY4YTI2N2NiMjI5MjZjNmI0OTAyNDNkNGQwYzIxNTdhNjg5ZCIsInBhY2thZ2VfaWQiOiI3MTUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=\"><button><i><\/i> Download<\/button><\/a>\u00a0 <br \/><a href=\"https:\/\/cancerimagingarchive.net\/datascope\/cptac\/home\/?filter={%22Tumor%22:%5B%22SAR%22%5D,%22Image_Available%22:%5B%22Yes%22%5D}\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Radiology modality data cleanup to remove extraneous scans.<\/p><h3>Version 8: Updated 2020\/09\/03<\/h3><table><tbody><tr><th>Data Type<\/th><th>Download all or Query\/Filter<\/th><\/tr><tr><td>Images (DICOM, 15.2 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/TCIA-CPTAC-SAR_v7_20200331.tcia\" download=\"TCIA-CPTAC-SAR_v7_20200331.tcia\"><button><i><\/i> Download<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 69 GB)<\/td><td><div><p><br \/><a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjcxNSIsInBhc3Njb2RlIjoiNTQ2ZWY4YTI2N2NiMjI5MjZjNmI0OTAyNDNkNGQwYzIxNTdhNjg5ZCIsInBhY2thZ2VfaWQiOiI3MTUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=\"><button><i><\/i> Download<\/button><\/a>\u00a0 <br \/><a href=\"https:\/\/cancerimagingarchive.net\/datascope\/cptac\/home\/?filter={%22Tumor%22:%5B%22SAR%22%5D,%22Image_Available%22:%5B%22Yes%22%5D}\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Changed to new Aspera download link for histopathology slides.<\/p><h3>Version 7: Updated 2020\/03\/31<\/h3><table><tbody><tr><th>Data Type<\/th><th>Download all or Query\/Filter<\/th><\/tr><tr><td>Images (DICOM, 15.2 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/TCIA-CPTAC-SAR_v7_20200331.tcia\" download=\"TCIA-CPTAC-SAR_v7_20200331.tcia\"><button><i><\/i> Download<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 69 GB)<\/td><td><div><p><a href=\"https:\/\/cancerimagingarchive.net\/datascope\/cptac\/home\/?filter={%22Tumor%22:%5B%22SAR%22%5D,%22Image_Available%22:%5B%22Yes%22%5D}\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Added 2 radiology subjects &amp; 6 pathology subjects.<\/p><h3>Version 6 : Updated 2019\/12\/16<\/h3><table><colgroup><col \/><col \/><\/colgroup><thead><tr><th><p>Data Type<\/p><\/th><th><p>Download all or Query\/Filter<\/p><\/th><\/tr><\/thead><tbody><tr><td>Images (DICOM,13 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a>\u00a0\u00a0\u00a0<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 69 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a><a href=\"https:\/\/pathology.cancerimagingarchive.net\/download\/SAR\/\">\u00a0<\/a><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Proteomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Genomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Added 2 new radiology subjects<\/p><h3>Version 5: Updated 2019\/12\/3<\/h3><table><colgroup><col \/><col \/><\/colgroup><thead><tr><th><p>Data Type<\/p><\/th><th><p>Download all or Query\/Filter<\/p><\/th><\/tr><\/thead><tbody><tr><td>Images (DICOM, 10.3 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a>\u00a0\u00a0\u00a0<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 69 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Proteomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Genomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Added Pathology Subjects<\/p><h3>Version 4: Updated 2019\/10\/30<\/h3><table><colgroup><col \/><col \/><\/colgroup><thead><tr><th><p>Data Type<\/p><\/th><th><p>Download all or Query\/Filter<\/p><\/th><\/tr><\/thead><tbody><tr><td>Images (DICOM, 10.3 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a>\u00a0\u00a0\u00a0<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 69 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Proteomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Genomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Added new subjects<\/p><h3>Version 3: Updated 2019\/09\/30<\/h3><table><colgroup><col \/><col \/><\/colgroup><thead><tr><th><p>Data Type<\/p><\/th><th><p>Download all or Query\/Filter<\/p><\/th><\/tr><\/thead><tbody><tr><td>Images (DICOM, 10.3 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a>\u00a0\u00a0\u00a0<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 68 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Proteomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Genomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Added new subjects.<\/p><h3>Version 2:\u00a0 Updated 2019\/06\/30<\/h3><table><colgroup><col \/><col \/><\/colgroup><thead><tr><th><p>Data Type<\/p><\/th><th><p>Download all or Query\/Filter<\/p><\/th><\/tr><\/thead><tbody><tr><td>Images (DICOM, 1.6 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a>\u00a0\u00a0\u00a0<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (SVS, 61.4 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1569 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_download_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Proteomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><tr><td>Genomics (web)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" rel=\"prettyPhoto noopener\"><img class=\"cm-inline-img-css alignright wp-image-1568 size-medium\" src=\"\/wp-content\/uploads\/tcia_wiki_search_button.png\" \/><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><p>Added Subjects<\/p><p>&nbsp;<\/p><h3>Version 1 : Updated 2019\/03\/31<\/h3><table><tbody><tr><th>Data Type<\/th><th>Download all or Query\/Filter<\/th><\/tr><tr><td>Images (DICOM, 1.5 GB)<\/td><td><div><p><a href=\"\/wp-content\/uploads\/CPTAC-SAR_batch1_Mar2019.tcia\" download=\"CPTAC-SAR_batch1_Mar2019.tcia\"><button><i><\/i> Download<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><tr><td>Tissue Slide Images (web)<\/td><td><div><p><br \/><a href=\"https:\/\/cancerimagingarchive.net\/datascope\/cptac\/home\/?filter={%22Tumor%22:%5B%22SAR%22%5D,%22Image_Available%22:%5B%22Yes%22%5D}\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><tr><td>Proteomics (web)<\/td><td><div><p>\u00a0\u00a0 <a href=\"https:\/\/pdc.cancer.gov\/pdc\/browse\/filters\/program_name:Clinical%20Proteomic%20Tumor%20Analysis%20Consortium\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><tr><td>Genomics (web)<\/td><td><div><p><br \/><a href=\"https:\/\/portal.gdc.cancer.gov\/repository?facetTab=cases&amp;filters=%7B%22op%22%3A%22and%22%2C%22content%22%3A%5B%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22cases.project.program.name%22%2C%22value%22%3A%5B%22CPTAC%22%5D%7D%7D%5D%7D&amp;searchTableTab=files\"><button><i><\/i> Search<\/button><\/a>\u00a0<\/p><\/div><\/td><\/tr><\/tbody><\/table>","collection_status":"Ongoing","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a> which leverage TCIA data. If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.","related_analysis_results":false,"species":["Human"],"version_number":"10","collection_title":"The Clinical Proteomic Tumor Analysis Consortium Sarcomas Collection","date_updated":"2023-05-10","related_collection":false,"subjects":"88","analysis_results":"","collection_short_title":"CPTAC-SAR","data_types":["CT","MR","PT","Histopathology"],"version_change_log":"<p class=\"auto-cursor-target\">1 <span style=\"color: #212529;\">pathology patient removed from study.<\/span><\/p>","collection_browse_title":"CPTAC-SAR","detailed_description":"<h3>A Note about TCIA and CPTAC Subject Identifiers and Dates<\/h3>\r\n<h4><strong>Subject Identifiers:<\/strong><\/h4>\r\nA subject with radiology and pathology images stored in TCIA is identified with a de-identified project Patient ID that is identical to the Patient ID of the same subject with clinical, proteomic, and\/or genomic data stored in other CPTAC databases and web sites.\r\n<h4><strong>Dates:<\/strong><\/h4>\r\nThe radiology imaging data is in DICOM format. To provide temporal context information aligned with events in the clinical data set for each patient, TCIA has inserted information in DICOM tag (0012,0050) <em>Clinical Trial Time Point ID<\/em>. This DICOM tag contains the number of days from the <u> <em>date the patient was initially diagnosed pathologically with the disease<\/em> <\/u> to the date of the scan. E.g. a scan acquired 3 days before the diagnosis would contain the value -3. A follow up scan acquired 90 days after diagnosis would contain the value 90.\r\n\r\nThe DICOM date tags (i.e. birth dates, imaging study dates, etc.) are modified per TCIA's standard process which offsets them by a random number of days. The offset is a number of days between 3 and 10 years prior to the real date that is consistent for each TCIA image-submitting site and collection, but that varies among sites and among collections from the same site. Thus, the number of days between a subject\u2019s longitudinal imaging studies are accurately preserved when more than one study has been archived while still meeting HIPAA requirements.","supporting_data":["Clinical"],"collection_featured_image":{"ID":"47081","post_author":"22","post_date":"2023-12-06 09:45:36","post_date_gmt":"2023-12-06 15:45:36","post_content":"","post_title":"cptac-logo-2","post_excerpt":"","post_status":"inherit","comment_status":"","ping_status":"closed","post_password":"","post_name":"cptac-logo-2","to_ping":"","pinged":"","post_modified":"2023-12-06 09:45:36","post_modified_gmt":"2023-12-06 15:45:36","post_content_filtered":"","post_parent":"42003","guid":"https:\/\/www.cancerimagingarchive.net\/?attachment_id=47081","menu_order":"0","post_type":"attachment","post_mime_type":"image\/png","comment_count":"0","pod_item_id":"47081"},"collection_summary":"<p>This collection contains subjects from the National Cancer Institute\u2019s <u> <a href=\"https:\/\/proteomics.cancer.gov\/programs\/cptac\">Clinical Proteomic Tumor Analysis Consortium<\/a> <\/u>\u00a0Sarcomas (CPTAC-SAR) cohort.\u00a0CPTAC is a national effort to accelerate the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis, or proteogenomics. Radiology and pathology images from CPTAC patients are being collected and made publicly available by The Cancer Imaging Archive to enable researchers to investigate cancer phenotypes which may correlate to corresponding proteomic, genomic and clinical data.<\/p><p>Imaging from each cancer type will be contained in its own TCIA Collection, with the collection name \"CPTAC-<em>cancertype<\/em>\". \u00a0Radiology imaging is collected from standard of care imaging performed on patients immediately before the pathological diagnosis, and from follow-up scans where available.\u00a0 For this reason the radiology image data sets are heterogeneous in terms of scanner modalities, manufacturers and acquisition protocols.\u00a0Pathology imaging is collected as part of the CPTAC qualification workflow. \u00a0<\/p><p>All CPTAC cohorts are released\u00a0as either a single combined cohort, or split into\u00a0<em>Discovery<\/em>\u00a0and\u00a0<em>Confirmatory<\/em>\u00a0where applicable.\u00a0 There are two main types of proteomic studies: discovery proteomics and targeted proteomics. The term \"discovery proteomics\" is in reference to \"untargeted\" identification and quantification of a maximal number of proteins in a biological or clinical sample. The term \u201ctargeted proteomics\u201d refers to quantitative measurements on a defined subset of total proteins in a biological or clinical sample, often following the completion of discovery proteomics studies to confirm interesting targets selected. Commonly used proteomic technologies and platforms are different types of mass spectrometry and protein microarrays depending on the needs, throughput and sample input requirement of an analysis, with further development on nanotechnologies and automation in the pipeline in order to improve the detection of low abundance proteins, increase throughput, and selectively reach a target protein\u00a0<em>in vivo<\/em>. \u00a0Once the protein targets of interest are identified, high-throughput targeted assays are developed for confirmatory studies: tests to affirm that the initial tests were accurate. A summary of CPTAC imaging efforts can be found on the\u00a0<u><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/CPTAC+Imaging+Proteomics\">CPTAC Imaging Proteomics<\/a><\/u>\u00a0page.\u00a0<\/p><h3>CPTAC Imaging Special Interest Group<\/h3><p>You can join the\u00a0<a class=\"external-link\" href=\"https:\/\/groups.google.com\/forum\/#!forum\/cptac-imaging-sig\" rel=\"nofollow\">CPTAC Imaging Special Interest Group <\/a>to be notified of webinars &amp; data releases, collaborate on common data wrangling tasks and seek out partners to explore research hypotheses!\u00a0 Artifacts from previous webinars such as slide decks and video recordings can be found on the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/CPTAC+SIG+Webinars\" rel=\"nofollow\">CPTAC SIG Webinars<\/a>\u00a0page.<\/p>","collection_acknowledgements":"<p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li>Cureline, Inc. team and clinical network, Brisbane, CA - Special thanks to\u00a0<strong>Olga Potapova, PhD<\/strong>,\u00a0 <strong>Vladislav Golubkov, PhD<\/strong>,\u00a0 <strong>Victoria Fulidou, MD<\/strong>,\u00a0 <strong>Alexander Sviridov, Dmitry Belyaev, MD, Oxana Paklina, MD, Dr.Sc., Galiya Setdikova, MD, PhD<\/strong>, and\u00a0 <strong>Denis Golbin, MD, PhD<\/strong>.\u00a0<\/li><li>BioPartners, CA - Special thanks to\u00a0<strong>Alexander Gasparian, PhD.<\/strong> \u00a0from the Department of Drug Discovery and Biomedical Sciences, University of South Carolina College of Pharmacy,\u00a0<strong>Kakhaber Zaalishvili, MD <\/strong>Medical Advisor and Staff Pathologist at BioPartners, LLC,\u00a0<strong>Milla Gorodnia,\u00a0 <\/strong>President of BioPartners, Inc.,\u00a0<strong>Victoria Christensen,<\/strong>\u00a0Global Business Development\/Project Coordination Manager,\u00a0<strong>Oksana Havryliuk, MD.<\/strong>\u00a0Chief of Research department of radiodiagnostics of NCI (Ukraine),\u00a0<strong>Marianna Gredil\u2019,<\/strong>\u00a0Director of BioPartners, LLC, and\u00a0 <strong>Anna Legenka<\/strong>\u00a0Chief of the Data Department at BioPartners, LLC<\/li><li>University of Pittsburgh\/UPMC, Pittsburgh, PA - Special thanks to<strong> Scott Beasley (MD, FACR)<\/strong> and <strong>Rose Jarosz<\/strong> in the Department of Radiology; <strong>Rajiv Dhir (MBBS, MBA)<\/strong> and <strong>Tony Green (HT (ASCP), AS)<\/strong> in the Department of Pathology (PBC).<\/li><\/ul>","collection_funding":"","hide_from_browse_table":"0","program":["CPTAC"],"_links":{"self":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections\/45249","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections"}],"about":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/wp\/v2\/types\/tcia_collection"}],"version-history":[{"count":1,"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections\/45249\/revisions"}],"predecessor-version":[{"id":48369,"href":"https:\/\/stage.cancerimagingarchive.net\/api\/v1\/collections\/45249\/revisions\/48369"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/stage.cancerimagingarchive.net\/api\/wp\/v2\/media\/47081"}],"wp:attachment":[{"href":"https:\/\/stage.cancerimagingarchive.net\/api\/wp\/v2\/media?parent=45249"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}