Search<\/span><\/i><\/a><\/div>\n(Download requires the NBIA Data Retriever .)<\/td>\n<\/tr>\n
\n| Tissue Slide Images (web)<\/td>\n | Search<\/span><\/i><\/a><\/td>\n<\/tr>\n\n| Clinical Data (TXT)<\/td>\n | Download<\/span><\/i><\/a><\/td>\n<\/tr>\n\n| Biomedical Data (TXT)<\/td>\n | Download<\/span><\/i><\/a><\/td>\n<\/tr>\n\n| Genomics (web)<\/td>\n | Search<\/span><\/i><\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n Click the Versions tab for more info about data releases.<\/p>\n Third Party Analyses of this Dataset<\/h3>\nTCIA encourages the community to\u00a0publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:<\/p>\n\n- Crowds Cure Cancer: Data collected at the RSNA 2017 annual meeting<\/a><\/li>\n
- Tumor-Infiltrating Lymphocytes Maps from TCGA H&E Whole Slide Pathology Images<\/a><\/li>\n<\/ul>\n[\/vc_column_text][\/tab][tab icon_family=”fontawesome” title=”Detailed Description” id=”1709841258852-0″ tab_id=”1709841258853-6″ icon_fontawesome=”fa fa-commenting-o”][vc_column_text]\n
\n\n\n| Image Statistics<\/th>\n | <\/th>\n<\/tr>\n | \n| Modalities<\/td>\n | CT, PT, NM<\/td>\n<\/tr>\n | \n| Number of Participants<\/td>\n | 69<\/td>\n<\/tr>\n | \n| Number of Studies<\/td>\n | 152<\/td>\n<\/tr>\n | \n| Number of Series<\/td>\n | 624<\/td>\n<\/tr>\n | \n| Number of Images<\/td>\n | 48,931<\/td>\n<\/tr>\n | \n| Images Size (GB)<\/td>\n | 18.3<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\nGDC Data Portal – Clinical and Genomic Data<\/h3>\nThe\u00a0GDC Data Portal<\/a>\u00a0has extensive clinical and genomic data, which can be matched to the patient identifiers on the images here in TCIA. \u00a0Below is a snapshot of clinical data extracted on 1\/5\/2016.<\/p>\n\n- TCGA-LUAD Clinical Data.zip<\/a><\/li>\n<\/ul>\n
Explanations of the clinical data can be found on the Biospecimen Core Resource Clinical Data Forms linked below:<\/p>\n \n- Lung Case Quality Control Form<\/a><\/li>\n
- Lung Enrollment Form<\/a><\/li>\n
- Lung Follow-Up Form<\/a><\/li>\n<\/ul>\n
A Note about TCIA and TCGA Subject Identifiers and Dates<\/h3>\nNOTE:<\/strong>\u00a0\u00a0On 12\/3\/12 TCIA staff were alerted to the fact that the middle 2 digits in the patient identifiers of images were not consistent with those on the TCGA Data Portal (e.g. patient TCGA-93-Z011 should have been TCGA-17-Z011). This was corrected and the data was re-posted on 12\/5\/12 so that all subjects now have 17 digits as intended.<\/p>\nSubject Identifiers:<\/strong>\u00a0a subject with radiology images stored in TCIA is identified with a Patient ID that is identical to the Patient ID of the same subject with demographic, clinical, pathological, and\/or genomic data stored in TCGA. For each TCGA case, the baseline TCGA imaging studies found on TCIA are pre-surgical.<\/p>\nDates:<\/strong>\u00a0TCIA and TCGA handle dates differently, and there are no immediate plans to reconcile:<\/p>\n\n- TCIA Dates:<\/u>\u00a0dates (be they birth dates, imaging study dates, etc.) in the Digital Imaging and Communications in Medicine (DICOM) headers of TCIA radiology images have been offset by a random number of days. The offset is a number of days between 3 and 10 years prior to the real date that is consistent for each TCIA image-submitting site and collection, but that varies among sites and among collections from the same site. Thus, the number of days between a subject\u2019s longitudinal imaging studies are accurately preserved when more than one study has been archived while still meeting HIPAA requirements.<\/li>\n
- TCGA Dates:<\/u>\u00a0the patient demographic and clinical event dates are all the number of days from the index date, which is the actual date of pathologic diagnosis. So all the dates in the data are relative negative or positive integers, except for the \u201cdays_to_pathologic_diagnosis\u201d value, which is 0 \u2013 the index date. The years of birth and diagnosis are maintained in the distributed clinical data file. The NCI retains a copy of the data with complete dates, but those data are not made available.With regard to other TCGA dates, if a date comes from a HIPAA \u201ccovered entity\u2019s\u201d medical record, it is turned into the relative day count from the index date. Dates like the date TCGA received the specimen or when the TCGA case report form was filled out are not such covered dates, and they will appear as\u00a0real dates (month, day, and year).<\/li>\n<\/ul>\n[\/vc_column_text][\/tab][tab icon_family=”fontawesome” title=”Citations & Data Usage Policy” id=”1709841258869-1″ tab_id=”1709841258870-2″ icon_fontawesome=”fa fa-handshake-o”][vc_column_text]\n
Citations & Data Usage Policy<\/h3>\nUsers of this data must abide by the\u00a0Creative Commons Attribution 3.0 Unported License<\/a>\u00a0under which it has been published. Attribution should include references to the following citations:<\/span><\/p>\n | | | | |