Deprecated: Creation of dynamic property quick_page_post_reds::$ppr_metaurl is deprecated in /var/www/html/wp-content/plugins/quick-pagepost-redirect-plugin/page_post_redirect_plugin.php on line 97

Deprecated: Creation of dynamic property quick_page_post_reds::$pprshowcols is deprecated in /var/www/html/wp-content/plugins/quick-pagepost-redirect-plugin/page_post_redirect_plugin.php on line 99

Deprecated: Creation of dynamic property quick_page_post_reds::$ppr_newwindow is deprecated in /var/www/html/wp-content/plugins/quick-pagepost-redirect-plugin/page_post_redirect_plugin.php on line 1531
OPC-RADIOMICS - The Cancer Imaging Archive (TCIA)
Deprecated: preg_split(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/wp-includes/formatting.php on line 3494

Deprecated: preg_split(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/wp-includes/formatting.php on line 3494
Skip to main content

OPC-RADIOMICS


Notice: Function Pods Templates was called incorrectly. Pod Template PHP code is no longer actively supported and will be completely removed in Pods 3.3 Please see Debugging in WordPress for more information. (This message was added in version 3.0.) in /var/www/html/wp-includes/functions.php on line 6085

Deprecated: Pod Template PHP code has been deprecated, please use WP Templates instead of embedding PHP. has been deprecated since Pods version 2.3 with no alternative available. in /var/www/html/wp-content/plugins/pods/includes/general.php on line 1037
The Cancer Imaging Archive

OPC-Radiomics | Radiomic Biomarkers in Oropharyngeal Carcinoma

DOI: 10.7937/tcia.2019.8dho2gls | Data Citation Required | Image Collection

Location Species Subjects Data Types Cancer Types Size Supporting Data Status Updated
Head-Neck Human 606 CT, RTSTRUCT Oropharyngeal 61.75GB Clinical Limited, Complete 2020/01/29

Summary

This collection has been deprecated. Data from the collection formerly called OPC-Radiomics has been updated. The data are downloadable but no longer viewable in the Cancer Imaging Archive. Please view the RADCURE page to obtain access to the updated data: https://doi.org/10.7937/J47W-NM11.

Oropharynx cancer is increasing in frequency in North America. More refined risk stratification and treatment personalization strategies are needed to improve cure rates and limit toxicities. Radomic features have shown promise for prognostication in oropharynx cancer based on datasets including hundreds of patients. Clinical outcomes data for oropharynx cancer patients treated at Princess Margaret Cancer Centre is of the highest quality, collected prospectively at the point of care. This data has resulted in the recent AJCC/UICC 8th edition staging system for oropharynx cancer (first published by O'Sullivan et al. in Lancet Oncology, 2016 [PMID 26936027]). By making publicly available the published data from our institution, which has now been published twice, we will empower researchers to perform meta-analysis and validation exercises of prognostic radiomic models. Ultimately this will lead to more robust models and bring us closer to clinical implementation and impact for our patients.

Purpose:

Distant metastasis (DM) is the main cause of death for patients with human papillomavirus (HPV)-related oropharyngeal cancers (OPC); yet there are few reliable predictors of DM in this disease. The role of quantitative imaging (i.e. radiomic) analysis was examined to determine whether there are primary tumor features discernible on imaging studies that associate with a higher risk of developing DM.  This data collection consists of oropharynx squamous cell carcinoma.

Methods:

Radiotherapy planning CT scans were retrieved for all non-metastatic p16-positive OPC patients treated with radiotherapy or chemoradiotherapy at a single institution between 2005 and 2010. Radiomic biomarkers were derived from each gross tumor volume (GTV). Biomarkers included four representative radiomic features from tumor first order statistics, shape, texture, and wavelet groups as well as a combined four-feature signature. Univariable Cox proportional hazards models for DM risk were identified. Discriminative performance of prognostic univariable and multivariable models was compared using the concordance index (C-index). Subgroup analyses were performed.

Results:

There were 300 HPV-related OPC patients who were eligible for the analysis. A total of 36 DM events occurred within a median follow-up of five years. On univariable analysis, top results included the four representative radiomic features (p<0.001), the radiomic signature (p<0.001), tumor stage (p<0.001), tumor diameter (p<0.001), and tumor volume (p<0.001). C-indices of the radiomic features (0.670-0.686), radiomic signature (0.670), stage (0.633), and tumor size metrics (0.653-0.674) demonstrated moderate discrimination of DM risk. Combined clinical-radiomic models yielded significantly improved performance (0.701-0.714; p<0.05). In subgroup analyses, the radiomic biomarkers consistently stratified patients for DM risk, particularly for those cohorts with greater risks (0.663-0.796), such as patients with stage III disease.

Conclusions:

Radiomic biomarkers appear to classify DM risk for patients with non-metastatic HPV-related OPC. Radiomic biomarkers could be used either alone or with other clinical characteristics in assignment of DM risk in future HPV-related OPC clinical trials.

Additional References: 

  • 300 patients in this dataset are also a subset of 542 patients from Princess Margaret Cancer Centre published in 2015: External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma. PMID:  26264429  DOI:  10.3109/0284186X.2015.1061214,
  • This dataset is also described in Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in HPV-related Oropharyngeal Carcinoma. PMID: 29506884 DOI:  10.1016/j.ijrobp.2018.01.057

Data Access

Some data in this collection contains images that could potentially be used to reconstruct a human face. To safeguard the privacy of participants, users must sign and submit a TCIA Restricted License Agreement to help@cancerimagingarchive.net before accessing the data.

Version 1: Updated 2020/01/29

Title Data Type Format Access Points Subjects Studies Series Images License
Images and Radiation Therapy Structures CT, RTSTRUCT DICOM
Download requires NBIA Data Retriever
606 606 1,220 108,813 TCIA Restricted
Clinical XLSX CC BY 3.0
Related Datasets
No related Analysis Results found: Submit your proposal! No related Collections found
Legend: Analysis Results| Collections

Citations & Data Usage Policy

Data Citation Required: Users must abide by the TCIA Data Usage Policy and Restrictions. Attribution must include the following citation, including the Digital Object Identifier:

Data Citation

Kwan JYY, Su J, Huang SH, Ghoraie LS, Xu W, Chan B, Yip KW, Giuliani M, Bayley A, Kim J, Hope AJ, Ringash J, Cho J, McNiven A, Hansen A, Goldstein D, de Almeida JR, Aerts HJ, Waldron JN, Haibe-Kains B, O’Sullivan B, Bratman SV, Liu FF. (2019). Data from Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in Oropharyngeal Carcinoma. The Cancer Imaging Archive.  https://doi.org/10.7937/tcia.2019.8dho2gls

Detailed Description

Supporting Documentation

  • 300 patients in this dataset are also a subset of 542 patients from Princess Margaret Cancer Centre published in 2015: External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma. PMID:  26264429  DOI:  10.3109/0284186X.2015.1061214 . You can download just this portion of the Collection using this link:OPC-Radiomics-300.tcia 30.9 GB

    to save a “.tcia” manifest file to your computer, which you must open with the  NBIA Data Retriever . Click the  Search  button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.
  • Please note:For some cases, there are HTV RTSTRUCT information listed, without GTV contours. HTV refers to a preoperative GTV target region, for instance in the setting of tonsillectomy. If there exist both GTV and HTV for a case, then there is probably a postoperative residual tumor seen. There are three listed clinical outcome results (columns “Local Failure”, “Regional Failure,” Distant Failure”);  “Persistent” would generally be considered treatment failure. Blank indicates no failure/recurrence in these columns.

Acknowledgements

We would like to acknowledge the individuals and institutions that have provided data for this collection:

  • Jennifer Yin Yee Kwan MD, Jie Su MSc, Shao Hui Huang MSc MRT(T) MD, Laleh S. Ghoraie PhD, Wei Xu PhD, Biu Chan, Kenneth W. Yip PhD, Meredith Giuliani MBBS MEd FRCPC, Andrew Bayley MD FRCPC, John Kim MD FRCPC, Andrew J. Hope MD FRCPC, Jolie Ringash MD MSc FRCPC, John Cho MD PhD FRCPC, Andrea McNiven PhD MCCPM, Aaron Hansen MBBS FRACP, David Goldstein MD FRCSC, John de Almeida MD MSc FRCSC, Hugo J. Aerts PhD, John N. Waldron MD MSc FRCPC, Benjamin Haibe-Kains PhD, Brian O’Sullivan MB BCh BAO FRCPC, Scott V. Bratman MD PhD FRCPC, Fei-Fei Liu MD FRCPC, Farnoosh Khodakarami, PhD, Katrina Rey-McIntyre, BSc, CCRP.

For scientific or other inquiries about this dataset, please contact TCIA's Helpdesk.

Related Publications

Publications by the Dataset Authors

The authors recommended this paper as the best source of additional information about this dataset:

  • Kwan JYY, Su J, Huang SH, Ghoraie LS, Xu W, Chan B, Yip KW, Giuliani M, Bayley A, Kim J, Hope AJ, Ringash J, Cho J, McNiven A, Hansen A, Goldstein D, de Almeida JR, Aerts HJ, Waldron JN, Haibe-Kains B, O’Sullivan B, Bratman SV, Liu FF.  (2018)  Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in HPV-related Oropharyngeal Carcinoma . International Journal of Radiation Oncology*Biology*Physics, 1-10. https://doi.org/10.1016/j.ijrobp.2018.01.057
    ScienceDirect link

No publications by dataset authors were found.

Publication Citation

Kwan JYY, Su J, Huang SH, Ghoraie LS, Xu W, Chan B, Yip KW, Giuliani M, Bayley A, Kim J, Hope AJ, Ringash J, Cho J, McNiven A, Hansen A, Goldstein D, de Almeida JR, Aerts HJ, Waldron JN, Haibe-Kains B, O’Sullivan B, Bratman SV, Liu FF.  (2018)  Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in HPV-related Oropharyngeal Carcinoma . International Journal of Radiation Oncology*Biology*Physics, 1-10. https://doi.org/10.1016/j.ijrobp.2018.01.057
ScienceDirect link

Research Community Publications

TCIA maintains a list of publications which leverage our data. If you have a publication you’d like to add please contact the TCIA Helpdesk. At this time the following related publication has been brought to TCIA’s attention:

  1. Leijenaar RT, Carvalho S, Hoebers FJ, Aerts HJ, van Elmpt WJ, Huang SH, Chan B, Waldron JN, O’sullivan B, Lambin P. (2015) External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma. Acta Oncol. 54(9):1423-9. DOI:  10.3109/0284186X.2015.1061214
  2. Lombardo, E., Kurz, C., Marschner, S., Avanzo, M., Gagliardi, V., Fanetti, G., Franchin, G., Stancanello, J., Corradini, S., Niyazi, M., Belka, C., Parodi, K., Riboldi, M., & Landry, G. (2021). Distant metastasis time to event analysis with CNNs in independent head and neck cancer cohorts. Scientific Reports, 11(1). DOI: 10.1038/s41598-021-85671-y

Other Publications Using this Data

TCIA maintains a list of publications which leverage our data. If you have a publication you’d like to add please contact the TCIA Helpdesk. At this time the following related publication has been brought to TCIA’s attention:

  1. Leijenaar RT, Carvalho S, Hoebers FJ, Aerts HJ, van Elmpt WJ, Huang SH, Chan B, Waldron JN, O’sullivan B, Lambin P. (2015) External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma. Acta Oncol. 54(9):1423-9. DOI:  10.3109/0284186X.2015.1061214
  2. Lombardo, E., Kurz, C., Marschner, S., Avanzo, M., Gagliardi, V., Fanetti, G., Franchin, G., Stancanello, J., Corradini, S., Niyazi, M., Belka, C., Parodi, K., Riboldi, M., & Landry, G. (2021). Distant metastasis time to event analysis with CNNs in independent head and neck cancer cohorts. Scientific Reports, 11(1). DOI: 10.1038/s41598-021-85671-y